In this tutorial, we are processing all channels and reading the names from the header information. Unless specified with -chnames, phys2bids will read the channel names from the header information in the file. Unless specified with -chsel, phys2bids will process and output all channels.
#EXPORT DATA LABCHART READER FULL#
It contains the full terminal output of your phys2bids call. This includes the same information outputted to the terminal at the end of the call. It describes the content of your tsv.gz file. Six files have been generated in the output directory:Ĭompressed file in tsv format containing your data without header information.Īs phys2bids is designed to be BIDs compatible, this is one of the two necessary BIDs files. INFO Exporting files for run 1 freq 1000.0 If you want to run it, call phys2bids using both "-ntp" and "-tr" arguments If the output folder doesn’t exist, it will be created. When calling phys2bids without the -info argument, it will generate files if you use the -outdir argument this is where phys2bids will save these files. (The -indir argument can also be used alongside the -info argument). it does not have to be in the current directory, as is the default. If you use -indir you can specify a path to your input file i.e. We’ll use the same inputs as above, as well as adding -indir and -outdir. Next, we’ll call phys2bids without the -info option. Generating outputs Specifying paths and names Now we know that the file contains four channels, sampled at the same frequency, and that the trigger is in the first column. code/conversion/tutorial_file.png, with the same name as your input filename. It will be saved as a png file in the directory. When using the -info option, the channel plot will always be made. INFO saving channel plot to physio/code/conversion/tutorial_file.png WARNING The given unit mmHg does not have aliases, passing it as is
INFO Checking that units of measure are BIDS compatible INFO phys2bids detected that your file is in Labchart format WARNING If both acq and txt files exist in the path, acq will be selected. INFO Currently running phys2bids version 0.4.0+
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